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African Health Sciences
Makerere University Medical School
ISSN: 1680-6905
EISSN: 1680-6905
Vol. 16, No. 1, 2016, pp. 141-148
Bioline Code: hs16020
Full paper language: English
Document type: Research Article
Document available free of charge

African Health Sciences, Vol. 16, No. 1, 2016, pp. 141-148

 en PCR-Internal Transcribed Spacer (ITS) genes sequencing and phylogenetic analysis of clinical and environmental Aspergillus check for this species in other resources species associated with HIV-TB co infected patients in a hospital in Abeokuta, southwestern Nigeria.
Shittu, Olufunke Bolatito; Adelaja, Oluwabunmi Molade; Obuotor, Tolulope Mobolaji; Sam-Wobo, Sam Olufemi & Adenaike, Adeyemi Sunday

Abstract


Background: Aspergillosis has been identified as one of the hospital acquired infections but the contribution of water and inhouse air as possible sources of Aspergillus infection in immunocompromised individuals like HIV-TB patients have not been studied in any hospital setting in Nigeria.
Objective: To identify and investigate genetic relationship between clinical and environmental Aspergillus check for this species in other resources species associated with HIV-TB co infected patients.
Methods: DNA extraction, purification, amplification and sequencing of Internal Transcribed Spacer (ITS) genes were performed using standard protocols. Similarity search using BLAST on NCBI was used for species identification and MEGA 5.0 was used for phylogenetic analysis.
Results: Analyses of sequenced ITS genes of selected fourteen (14) Aspergillus isolates identified in the GenBank database revealed Aspergillus niger check for this species in other resources (28.57%), Aspergillus tubingensis check for this species in other resources (7.14%), Aspergillus flavus check for this species in other resources (7.14%) and Aspergillus fumigatus check for this species in other resources (57.14%). Aspergillus in sputum of HIV patients were Aspergillus niger, A. fumigatus, A. tubingensis and A. flavus. Also, A. niger and A. fumigatus were identified from water and open-air. Phylogenetic analysis of sequences yielded genetic relatedness between clinical and environmental isolates.
Conclusion: Water and air in health care settings in Nigeria are important sources of Aspergillus sp. for HIV-TB patients.

Keywords
Internal transcribed spacer genes; phylogenetic; HIV-TB; clinical and environmental fungi; genetic relationship

 
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